Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralization

Research output: Contribution to journalJournal articleResearchpeer-review

  • Mikyung Kim
  • Zhen-Yu J Sun
  • Rand, Kasper Dyrberg
  • Xiaomeng Shi
  • Likai Song
  • Yuxing Cheng
  • Amr F Fahmy
  • Shreoshi Majumdar
  • Gilad Ofek
  • Yongping Yang
  • Peter D Kwong
  • Jia-Huai Wang
  • John R Engen
  • Gerhard Wagner
  • Ellis L Reinherz
Broadly neutralizing antibodies such as 2F5 are directed against the membrane-proximal external region (MPER) of HIV-1 GP41 and recognize well-defined linear core sequences. These epitopes can be engrafted onto protein scaffolds to serve as immunogens with high structural fidelity. Although antibodies that bind to this core GP41 epitope can be elicited, they lack neutralizing activity. To understand this paradox, we used biophysical methods to investigate the binding of human 2F5 to the MPER in a membrane environment, where it resides in vivo. Recognition is stepwise, through a paratope more extensive than core binding site contacts alone, and dynamic rearrangement through an apparent scoop-like movement of heavy chain complementarity-determining region 3 (CDRH3) is essential for MPER extraction from the viral membrane. Core-epitope recognition on the virus requires the induction of conformational changes in both the MPER and the paratope. Hence, target neutralization through this lipid-embedded viral segment places stringent requirements on the plasticity of the antibody combining site.
Original languageEnglish
JournalNature Structural and Molecular Biology
Volume18
Issue number11
Pages (from-to)1235-43
Number of pages9
ISSN1545-9993
DOIs
Publication statusPublished - 2011
Externally publishedYes

ID: 40129348