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The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. / Iacobucci, Claudio; Piotrowski, Christine; Aebersold, Ruedi; Amaral, Bruno C; Andrews, Philip C; Bernfur, Katja; Borchers, Christoph H; Brodie, Nicholas I; Bruce, James E; Cao, Yong; Chaignepain, Stéphane; Chavez, Juan D; Claverol, Stéphane; Cox, Jurgen; Davis, Trisha N; Degliesposti, Gianluca; Dong, Meng-Qiu; Edinger, Nufar; Emanuelsson, Cecilia; Gay, Marina; Gomes-Neto, Francisco; Gozzo, Fabio Cesar; Gutierrez, Craig B; Haupt, Caroline; Heck, Albert J R; Herzog, Frank; Huang, Lan; Hoopmann, Michael R; Kalisman, Nir; Klykov, Oleg; Kukačka, Zdeněk; Liu, Fan; MacCoss, Michael J; Mechtler, Karl; Mesika, Ravit; Moritz, Robert L; Nagaraj, Nagarjuna; Nesati, Victor; Neves-Fereira, Ana G C; Ninnis, Robert; Novák, Petr; O'Reilly, Francis J; Pelzing, Matthias; Petrotchenko, Evgeniy V; Piersimoni, Lolita; Plasencia, Manolo; Pukala, Tara L; Rand, Kasper D; Rappsilber, Juri; Reichman, Dana; Sailer, Carolin; Sarnowski, Chris P; Scheltema, Richard A; Schmidt, Carla; Schriemer, David C; Shi, Yi; Skehel, J Mark; Slavin, Moriya; Sobott, Frank; Solis-Mezarino, Victor; Stephanowitz, Heike; Stengel, Florian; Stieger, Christian E; Trabjerg, Esben; Trnka, Michael J; Vilaseca, Marta; Viner, Rosa; Xiang, Yufei; Yılmaz, Şule; Zelter, Alex; Ziemianowicz, Daniel S; Leitner, Alexander; Sinz, Andrea.
In:
Analytical Chemistry, Vol. 91, No. 11, 02.05.2019, p. 6953-6961.
Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
Iacobucci, C, Piotrowski, C, Aebersold, R, Amaral, BC, Andrews, PC, Bernfur, K, Borchers, CH, Brodie, NI, Bruce, JE, Cao, Y, Chaignepain, S, Chavez, JD, Claverol, S, Cox, J, Davis, TN, Degliesposti, G, Dong, M-Q, Edinger, N, Emanuelsson, C, Gay, M, Gomes-Neto, F, Gozzo, FC, Gutierrez, CB, Haupt, C, Heck, AJR, Herzog, F, Huang, L, Hoopmann, MR, Kalisman, N, Klykov, O, Kukačka, Z, Liu, F, MacCoss, MJ, Mechtler, K, Mesika, R, Moritz, RL, Nagaraj, N, Nesati, V, Neves-Fereira, AGC, Ninnis, R, Novák, P, O'Reilly, FJ, Pelzing, M, Petrotchenko, EV, Piersimoni, L, Plasencia, M, Pukala, TL
, Rand, KD, Rappsilber, J, Reichman, D, Sailer, C, Sarnowski, CP, Scheltema, RA, Schmidt, C, Schriemer, DC, Shi, Y, Skehel, JM, Slavin, M, Sobott, F, Solis-Mezarino, V, Stephanowitz, H, Stengel, F, Stieger, CE
, Trabjerg, E, Trnka, MJ, Vilaseca, M, Viner, R, Xiang, Y, Yılmaz, Ş, Zelter, A, Ziemianowicz, DS, Leitner, A & Sinz, A 2019, '
The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study',
Analytical Chemistry, vol. 91, no. 11, pp. 6953-6961.
https://doi.org/10.1021/acs.analchem.9b00658APA
Iacobucci, C., Piotrowski, C., Aebersold, R., Amaral, B. C., Andrews, P. C., Bernfur, K., Borchers, C. H., Brodie, N. I., Bruce, J. E., Cao, Y., Chaignepain, S., Chavez, J. D., Claverol, S., Cox, J., Davis, T. N., Degliesposti, G., Dong, M-Q., Edinger, N., Emanuelsson, C., ... Sinz, A. (2019).
The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study.
Analytical Chemistry,
91(11), 6953-6961.
https://doi.org/10.1021/acs.analchem.9b00658Vancouver
Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K et al.
The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study.
Analytical Chemistry. 2019 May 2;91(11):6953-6961.
https://doi.org/10.1021/acs.analchem.9b00658Author
Iacobucci, Claudio ; Piotrowski, Christine ; Aebersold, Ruedi ; Amaral, Bruno C ; Andrews, Philip C ; Bernfur, Katja ; Borchers, Christoph H ; Brodie, Nicholas I ; Bruce, James E ; Cao, Yong ; Chaignepain, Stéphane ; Chavez, Juan D ; Claverol, Stéphane ; Cox, Jurgen ; Davis, Trisha N ; Degliesposti, Gianluca ; Dong, Meng-Qiu ; Edinger, Nufar ; Emanuelsson, Cecilia ; Gay, Marina ; Gomes-Neto, Francisco ; Gozzo, Fabio Cesar ; Gutierrez, Craig B ; Haupt, Caroline ; Heck, Albert J R ; Herzog, Frank ; Huang, Lan ; Hoopmann, Michael R ; Kalisman, Nir ; Klykov, Oleg ; Kukačka, Zdeněk ; Liu, Fan ; MacCoss, Michael J ; Mechtler, Karl ; Mesika, Ravit ; Moritz, Robert L ; Nagaraj, Nagarjuna ; Nesati, Victor ; Neves-Fereira, Ana G C ; Ninnis, Robert ; Novák, Petr ; O'Reilly, Francis J ; Pelzing, Matthias ; Petrotchenko, Evgeniy V ; Piersimoni, Lolita ; Plasencia, Manolo ; Pukala, Tara L ; Rand, Kasper D ; Rappsilber, Juri ; Reichman, Dana ; Sailer, Carolin ; Sarnowski, Chris P ; Scheltema, Richard A ; Schmidt, Carla ; Schriemer, David C ; Shi, Yi ; Skehel, J Mark ; Slavin, Moriya ; Sobott, Frank ; Solis-Mezarino, Victor ; Stephanowitz, Heike ; Stengel, Florian ; Stieger, Christian E ; Trabjerg, Esben ; Trnka, Michael J ; Vilaseca, Marta ; Viner, Rosa ; Xiang, Yufei ; Yılmaz, Şule ; Zelter, Alex ; Ziemianowicz, Daniel S ; Leitner, Alexander ; Sinz, Andrea. / The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. In: Analytical Chemistry. 2019 ; Vol. 91, No. 11. pp. 6953-6961.
Bibtex
@article{b0c4a3034ff147bdb7c9ce0ef7cace62,
title = "The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study",
abstract = "The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein-protein interactions has increased during the last years. As the technique is now becoming routine for in vitro and in vivo applications in proteomics and structural biology there is a pressing need to define protocols as well as data analysis and reporting formats. Such consensus formats should become accepted in the field and be shown to lead to reproducible results. This first, community-based harmonization study on XL-MS is based on the results of 32 groups participating worldwide. The aim of this paper is to summarize the status quo of XL-MS and to compare and evaluate existing cross-linking strategies. Our study therefore builds the framework for establishing best practice guidelines for conducting cross-linking experiments, performing data analysis, and reporting formats with the ultimate goal of assisting scientists to generate accurate and reproducible XL-MS results.",
author = "Claudio Iacobucci and Christine Piotrowski and Ruedi Aebersold and Amaral, {Bruno C} and Andrews, {Philip C} and Katja Bernfur and Borchers, {Christoph H} and Brodie, {Nicholas I} and Bruce, {James E} and Yong Cao and St{\'e}phane Chaignepain and Chavez, {Juan D} and St{\'e}phane Claverol and Jurgen Cox and Davis, {Trisha N} and Gianluca Degliesposti and Meng-Qiu Dong and Nufar Edinger and Cecilia Emanuelsson and Marina Gay and Francisco Gomes-Neto and Gozzo, {Fabio Cesar} and Gutierrez, {Craig B} and Caroline Haupt and Heck, {Albert J R} and Frank Herzog and Lan Huang and Hoopmann, {Michael R} and Nir Kalisman and Oleg Klykov and Zden{\v e}k Kuka{\v c}ka and Fan Liu and MacCoss, {Michael J} and Karl Mechtler and Ravit Mesika and Moritz, {Robert L} and Nagarjuna Nagaraj and Victor Nesati and Neves-Fereira, {Ana G C} and Robert Ninnis and Petr Nov{\'a}k and O'Reilly, {Francis J} and Matthias Pelzing and Petrotchenko, {Evgeniy V} and Lolita Piersimoni and Manolo Plasencia and Pukala, {Tara L} and Rand, {Kasper D} and Juri Rappsilber and Dana Reichman and Carolin Sailer and Sarnowski, {Chris P} and Scheltema, {Richard A} and Carla Schmidt and Schriemer, {David C} and Yi Shi and Skehel, {J Mark} and Moriya Slavin and Frank Sobott and Victor Solis-Mezarino and Heike Stephanowitz and Florian Stengel and Stieger, {Christian E} and Esben Trabjerg and Trnka, {Michael J} and Marta Vilaseca and Rosa Viner and Yufei Xiang and {\c S}ule Yılmaz and Alex Zelter and Ziemianowicz, {Daniel S} and Alexander Leitner and Andrea Sinz",
year = "2019",
month = may,
day = "2",
doi = "10.1021/acs.analchem.9b00658",
language = "English",
volume = "91",
pages = "6953--6961",
journal = "Industrial And Engineering Chemistry Analytical Edition",
issn = "0003-2700",
publisher = "American Chemical Society",
number = "11",
}
RIS
TY - JOUR
T1 - The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study
AU - Iacobucci, Claudio
AU - Piotrowski, Christine
AU - Aebersold, Ruedi
AU - Amaral, Bruno C
AU - Andrews, Philip C
AU - Bernfur, Katja
AU - Borchers, Christoph H
AU - Brodie, Nicholas I
AU - Bruce, James E
AU - Cao, Yong
AU - Chaignepain, Stéphane
AU - Chavez, Juan D
AU - Claverol, Stéphane
AU - Cox, Jurgen
AU - Davis, Trisha N
AU - Degliesposti, Gianluca
AU - Dong, Meng-Qiu
AU - Edinger, Nufar
AU - Emanuelsson, Cecilia
AU - Gay, Marina
AU - Gomes-Neto, Francisco
AU - Gozzo, Fabio Cesar
AU - Gutierrez, Craig B
AU - Haupt, Caroline
AU - Heck, Albert J R
AU - Herzog, Frank
AU - Huang, Lan
AU - Hoopmann, Michael R
AU - Kalisman, Nir
AU - Klykov, Oleg
AU - Kukačka, Zdeněk
AU - Liu, Fan
AU - MacCoss, Michael J
AU - Mechtler, Karl
AU - Mesika, Ravit
AU - Moritz, Robert L
AU - Nagaraj, Nagarjuna
AU - Nesati, Victor
AU - Neves-Fereira, Ana G C
AU - Ninnis, Robert
AU - Novák, Petr
AU - O'Reilly, Francis J
AU - Pelzing, Matthias
AU - Petrotchenko, Evgeniy V
AU - Piersimoni, Lolita
AU - Plasencia, Manolo
AU - Pukala, Tara L
AU - Rand, Kasper D
AU - Rappsilber, Juri
AU - Reichman, Dana
AU - Sailer, Carolin
AU - Sarnowski, Chris P
AU - Scheltema, Richard A
AU - Schmidt, Carla
AU - Schriemer, David C
AU - Shi, Yi
AU - Skehel, J Mark
AU - Slavin, Moriya
AU - Sobott, Frank
AU - Solis-Mezarino, Victor
AU - Stephanowitz, Heike
AU - Stengel, Florian
AU - Stieger, Christian E
AU - Trabjerg, Esben
AU - Trnka, Michael J
AU - Vilaseca, Marta
AU - Viner, Rosa
AU - Xiang, Yufei
AU - Yılmaz, Şule
AU - Zelter, Alex
AU - Ziemianowicz, Daniel S
AU - Leitner, Alexander
AU - Sinz, Andrea
PY - 2019/5/2
Y1 - 2019/5/2
N2 - The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein-protein interactions has increased during the last years. As the technique is now becoming routine for in vitro and in vivo applications in proteomics and structural biology there is a pressing need to define protocols as well as data analysis and reporting formats. Such consensus formats should become accepted in the field and be shown to lead to reproducible results. This first, community-based harmonization study on XL-MS is based on the results of 32 groups participating worldwide. The aim of this paper is to summarize the status quo of XL-MS and to compare and evaluate existing cross-linking strategies. Our study therefore builds the framework for establishing best practice guidelines for conducting cross-linking experiments, performing data analysis, and reporting formats with the ultimate goal of assisting scientists to generate accurate and reproducible XL-MS results.
AB - The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein-protein interactions has increased during the last years. As the technique is now becoming routine for in vitro and in vivo applications in proteomics and structural biology there is a pressing need to define protocols as well as data analysis and reporting formats. Such consensus formats should become accepted in the field and be shown to lead to reproducible results. This first, community-based harmonization study on XL-MS is based on the results of 32 groups participating worldwide. The aim of this paper is to summarize the status quo of XL-MS and to compare and evaluate existing cross-linking strategies. Our study therefore builds the framework for establishing best practice guidelines for conducting cross-linking experiments, performing data analysis, and reporting formats with the ultimate goal of assisting scientists to generate accurate and reproducible XL-MS results.
U2 - 10.1021/acs.analchem.9b00658
DO - 10.1021/acs.analchem.9b00658
M3 - Journal article
C2 - 31045356
VL - 91
SP - 6953
EP - 6961
JO - Industrial And Engineering Chemistry Analytical Edition
JF - Industrial And Engineering Chemistry Analytical Edition
SN - 0003-2700
IS - 11
ER -
