SNP-finding in pig mitochondrial ESTs

Research output: Contribution to journal › Journal article › Research › peer-review

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SNP-finding in pig mitochondrial ESTs. / Scheibye-Alsing, Karsten; Cirera Salicio, Susanna; Gilchrist, M.J.; Fredholm, Merete; Gorodkin, Jan.

In: Animal Genetics, Vol. 39, No. 2, 2008, p. 193-195.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Scheibye-Alsing, K, Cirera Salicio, S, Gilchrist, MJ, Fredholm, M & Gorodkin, J 2008, 'SNP-finding in pig mitochondrial ESTs', Animal Genetics, vol. 39, no. 2, pp. 193-195. https://doi.org/10.1111/j.1365-2052.2007.01694.x

APA

Scheibye-Alsing, K., Cirera Salicio, S., Gilchrist, M. J., Fredholm, M., & Gorodkin, J. (2008). SNP-finding in pig mitochondrial ESTs. Animal Genetics, 39(2), 193-195. https://doi.org/10.1111/j.1365-2052.2007.01694.x

Vancouver

Scheibye-Alsing K, Cirera Salicio S, Gilchrist MJ, Fredholm M, Gorodkin J. SNP-finding in pig mitochondrial ESTs. Animal Genetics. 2008;39(2):193-195. https://doi.org/10.1111/j.1365-2052.2007.01694.x

Author

Scheibye-Alsing, Karsten ; Cirera Salicio, Susanna ; Gilchrist, M.J. ; Fredholm, Merete ; Gorodkin, Jan. / SNP-finding in pig mitochondrial ESTs. In: Animal Genetics. 2008 ; Vol. 39, No. 2. pp. 193-195.

Bibtex

@article{e196e440a1c311ddb6ae000ea68e967b,
title = "SNP-finding in pig mitochondrial ESTs",
abstract = "The Sino-Danish pig genome project produced 685 851 ESTs (Gorodkin et al. 2007), of which 41 499 originated from the mitochondrial genome. In this study, the mitochondrial ESTs were assembled, and 374 putative SNPs were found. Chromatograms for the ESTs containing SNPs were manually inspected, and 112 total (52 non-synonymous) SNPs were found to be of high confidence (five of them are close to disease-causing SNPs in humans). Nine of the high-confidence SNPs were tested experimentally, and eight were confirmed. The SNPs can be accessed online at http://pigest.ku.dk/more.mito",
keywords = "Former LIFE faculty, expressed sequence tags, mitochondrial, pig, single nucleotide polymorphisms",
author = "Karsten Scheibye-Alsing and {Cirera Salicio}, Susanna and M.J. Gilchrist and Merete Fredholm and Jan Gorodkin",
year = "2008",
doi = "10.1111/j.1365-2052.2007.01694.x",
language = "English",
volume = "39",
pages = "193--195",
journal = "Animal Genetics",
issn = "0268-9146",
publisher = "Wiley-Blackwell",
number = "2",

}

RIS

TY - JOUR

T1 - SNP-finding in pig mitochondrial ESTs

AU - Scheibye-Alsing, Karsten

AU - Cirera Salicio, Susanna

AU - Gilchrist, M.J.

AU - Fredholm, Merete

AU - Gorodkin, Jan

PY - 2008

Y1 - 2008

N2 - The Sino-Danish pig genome project produced 685 851 ESTs (Gorodkin et al. 2007), of which 41 499 originated from the mitochondrial genome. In this study, the mitochondrial ESTs were assembled, and 374 putative SNPs were found. Chromatograms for the ESTs containing SNPs were manually inspected, and 112 total (52 non-synonymous) SNPs were found to be of high confidence (five of them are close to disease-causing SNPs in humans). Nine of the high-confidence SNPs were tested experimentally, and eight were confirmed. The SNPs can be accessed online at http://pigest.ku.dk/more.mito

AB - The Sino-Danish pig genome project produced 685 851 ESTs (Gorodkin et al. 2007), of which 41 499 originated from the mitochondrial genome. In this study, the mitochondrial ESTs were assembled, and 374 putative SNPs were found. Chromatograms for the ESTs containing SNPs were manually inspected, and 112 total (52 non-synonymous) SNPs were found to be of high confidence (five of them are close to disease-causing SNPs in humans). Nine of the high-confidence SNPs were tested experimentally, and eight were confirmed. The SNPs can be accessed online at http://pigest.ku.dk/more.mito

KW - Former LIFE faculty

KW - expressed sequence tags

KW - mitochondrial

KW - pig

KW - single nucleotide polymorphisms

U2 - 10.1111/j.1365-2052.2007.01694.x

DO - 10.1111/j.1365-2052.2007.01694.x

M3 - Journal article

C2 - 18261187

VL - 39

SP - 193

EP - 195

JO - Animal Genetics

JF - Animal Genetics

SN - 0268-9146

IS - 2

ER -

ID: 8104862